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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22733355_22734621_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22733355 - 22734621
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTGCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATTGCTGATTT
Flanking Amino Acid:
VWLQWLFLGFDFKSMFKCGK
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.3
0.68
0.9
70.5
40.6
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
49.5
0.04
2.1
74.02
42.9

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167