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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22734721_22734816_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22734721 - 22734816
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
ATGTCAAGAAAA
Flanking Amino Acid:
QEEYKKLGPMSYPEIVTLIL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74
36.6
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
81.7
0.71
0.8
77.1
31.8
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
44.6
-0.4
2
58.89
39.7

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167