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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22734919_22741100_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22734919 - 22741100
Intron Length:
6182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TTCTTGTTAACT
Flanking Amino Acid:
FIPGWSSLFPKYKGYATDST
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
72.4
0.5
1
70.5
39.1
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
68.1
0.65
2.1
86.99
39.2

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167