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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22741205_22741857_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
22741205 - 22741857
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTAAGTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAT
Flanking Amino Acid:
TLSRTSNGESTAYGYTPLIT
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.2
55.1
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
36.3
-1.6
3.4
53.3
44.8
Minor BPS
68.3
0.65
1.3
78.91
37.3

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167