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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22741968_22742615_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22741968 - 22742615
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTGTAAAACA
Flanking Amino Acid:
GGFALADGCEVSKLSAWVAS
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
81.6
0.71
0.9
77.3
36.3
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
48.4
-0.1
2.3
71.7
40.8

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167