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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22742778_22743698_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22742778 - 22743698
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATTT
Flanking Amino Acid:
TIFLPILSPLAEAIHVNPLF
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
53.6
0.19
1.7
70.13
42.3

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167