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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22743837_22743963_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22743837 - 22743963
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TAGTATTTGATT
Flanking Amino Acid:
SYGHLTVMDMVKAGLGINII
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75.6
0.58
0.7
73.4
24.9
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
58.8
0.36
1.5
72.28
39.1

Associated Gene:

Gene:
SLC13A1
Ensembl Gene ID:
ENSAPLG00000013575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014157
22719938 - 22745104
25167