Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2276489_2282638_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2276489 - 2282638

Intron Length:

6150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTACGTGAG

5'SS Class:

major

3'SS Sequence:

GTTCTCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

CAGAATTTAATC

Flanking Amino Acid:

HRPKAADMDLEWRQASGARM

Intron Amino Acid Position:

1552

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

63.4

43.1

Major BPS

90.7

1.01

0.7

19.9

Major PPT

83.5

0.75

0.8

77.3

31.4

Minor 5ss

30.5

-2.2

3.3

Minor BPS

49.2

-0

1.5

52.81

Associated Gene:

Gene:

PLXNA4

Ensembl Gene ID:

ENSAPLG00000016282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017012

1929223 - 2304766

375544