Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22782049_22790839_R

Intron Information:

Intron Rank:

141157

Intron Class:

major

Intron Phase:

Intron Coordinates:

22782049 - 22790839

Intron Length:

8791

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGACAT

U12 Branch Point Sequence:

CCAGCCCTGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.2

0.97

0.8

82.5

Major BPS

58.8

0.22

1.2

66.8

39.9

Major PPT

83.3

0.75

0.8

74.6

35.6

Minor 5ss

35.9

-1.6

3.3

47.8

47.9

Minor BPS

48.3

-0.1

1.8

55.53

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042423

22779940 - 22791181

11242