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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22793017_22794071_R

Intron Information:

Intron Rank:
142621
Intron Class:
major
Intron Phase:
Intron Coordinates:
22793017 - 22794071
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTTGTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
65
42.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84.3
0.77
0.9
80.6
37
Minor 5ss
31.8
-2.1
3
38.9
46.2
Minor BPS
51.2
0.04
2.3
70.29
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018954
22792778 - 22795351
2574