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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22793325_22795889_F

Intron Information:

Intron Rank:
140002
Intron Class:
major
Intron Phase:
Intron Coordinates:
22793325 - 22795889
Intron Length:
2565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.2
0.63
0.9
69
41
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
64.7
0.54
1.7
79.24
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025257
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019281
22792778 - 22799687
6910