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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22794158_22795293_R

Intron Information:

Intron Rank:
142622
Intron Class:
major
Intron Phase:
Intron Coordinates:
22794158 - 22795293
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TAGTCTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TAACCCATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
79.6
0.67
0.9
73
37.1
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
60.1
0.31
1.6
68.58
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018954
22792778 - 22795351
2574