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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2285492_2287129_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2285492 - 2287129
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
AACCCATTAACC
Flanking Amino Acid:
TVSRTSASKYENMIRYTGSP
Intron Amino Acid Position:
1620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.9
36.6
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
85
0.79
0.8
79.8
32.1
Minor 5ss
33.6
-1.9
3.5
49.7
46.1
Minor BPS
59.6
0.28
1.6
65.22
39.5

Associated Gene:

Gene:
PLXNA4
Ensembl Gene ID:
ENSAPLG00000016282
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017012
1929223 - 2304766
375544