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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22886535_22927498_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22886535 - 22927498
Intron Length:
40964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
TTTTTTGCAAAA
Flanking Amino Acid:
FCNAVRSYYEVFLKSDRVAR
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
69.4
0.44
1.1
72.4
36.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
47.4
-0.2
2.2
68.07
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033980
22822008 - 23091379
269372
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372