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Intron Name: Anas_platyrhynchos_platyrhynchos_1_2290852_2293817_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2290852 - 2293817

Intron Length:

2966

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

ACCCCTCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TGAACCATTACT

Flanking Amino Acid:

PHVRHTWKSNCLPLRFWVNM

Intron Amino Acid Position:

1740

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

64.9

41.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

75.7

0.58

0.8

68.8

30.8

Minor 5ss

26.8

-2.7

28.2

38.6

Minor BPS

50.3

0.09

72.19

43.6

Associated Gene:

Gene:

PLXNA4

Ensembl Gene ID:

ENSAPLG00000016282

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017012

1929223 - 2304766

375544