About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_22948806_22949789_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22948806 - 22949789
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
TTCTTCCCAACT
Flanking Amino Acid:
RLQLAEQMARERKFPKFITR
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
76.2
0.59
1
75.5
33.3
Minor 5ss
34
-1.8
3.3
40.9
45.4
Minor BPS
58.3
0.34
1.9
80.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033980
22822008 - 23091379
269372
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372