About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23013047_23019675_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23013047 - 23019675
Intron Length:
6629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTC
Flanking Amino Acid:
WKKRYFVLVQVSQYTFAMCS
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1.1
79.2
36.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.9
0.81
0.8
84.9
28.7
Minor 5ss
31.5
-2.1
2.4
34.9
40.7
Minor BPS
66.4
0.49
1.6
73.26
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372
ENSAPLT00000033980
22822008 - 23091379
269372