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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23019785_23020921_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23019785 - 23020921
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TTTCCTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAA
U12 Branch Point Sequence:
CTTACCAAGATT
Flanking Amino Acid:
YTVDYTAPHTGLQGGRMFFN
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
56.4
0.16
1.3
67.1
39.2
Major PPT
83.4
0.75
0.8
81.1
30.9
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
47.1
-0.1
2
68.53
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033980
22822008 - 23091379
269372
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372