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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23021126_23027375_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23021126 - 23027375
Intron Length:
6250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTCGC
5'SS Class:
major
3'SS Sequence:
CTTGTATGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
CTTGTATGAACA
Flanking Amino Acid:
GNVNTDVSPLYTDRGQKHGM
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
61.8
42.9
Major BPS
67.6
0.44
1.2
75
40
Major PPT
66.7
0.38
1.1
62.2
42.4
Minor 5ss
37.1
-1.5
3
50.7
40
Minor BPS
49.6
-0
1.8
64.76
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372
ENSAPLT00000033980
22822008 - 23091379
269372