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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23027513_23031121_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23027513 - 23031121
Intron Length:
3609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
HRLNDSYSCLGWFSPGQVFV
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372
ENSAPLT00000033980
22822008 - 23091379
269372