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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23031310_23043908_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23031310 - 23043908
Intron Length:
12599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAGTTCTTAAAT
Flanking Amino Acid:
AFCASHVHGNRPDGIGTVSV
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.3
28.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.4
0.69
0.9
73.6
40.4
Minor 5ss
40.6
-1.1
2.8
52.6
44.6
Minor BPS
68.5
0.66
1.4
76.7
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372
ENSAPLT00000033980
22822008 - 23091379
269372