Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23044011_23049898_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23044011 - 23049898

Intron Length:

5888

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTAAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTTT

U12 Branch Point Sequence:

TTTTTTTTAAAG

Flanking Amino Acid:

SLLENQISHFRYCFPFGRPE

Intron Amino Acid Position:

758

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.5

1.12

0.6

90.6

20.3

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

87.3

0.84

0.9

89.9

23.6

Minor 5ss

36.3

-1.6

3.3

47.2

Minor BPS

72.6

0.57

1.4

75.95

35.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014404

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017397

22822008 - 23092406

270399

ENSAPLT00000015093

22822008 - 23092406

270399