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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23069175_23070712_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23069175 - 23070712
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GGGATTCCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTGTTCACAACA
Flanking Amino Acid:
LQQNEEHHSEGREAFAWWPE
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
50.7
0.02
1.1
48.5
39.6
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
56.6
0.2
1.8
72.32
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033980
22822008 - 23091379
269372
ENSAPLT00000017397
22822008 - 23092406
270399
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372