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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23082484_23089448_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23082484 - 23089448
Intron Length:
6965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGGGAT
U12 Branch Point Sequence:
TGTTTCTTATAG
Flanking Amino Acid:
PTWMTSMYDSTNGSATSEDL
Intron Amino Acid Position:
998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
79.6
35.4
Major BPS
46.5
-0.2
1.6
42.8
49.4
Major PPT
85
0.79
0.7
80.8
31.3
Minor 5ss
43.7
-0.7
2.8
58.7
39.4
Minor BPS
57.6
0.1
1.8
65.12
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033980
22822008 - 23091379
269372
ENSAPLT00000024793
22822008 - 23091379
269372
ENSAPLT00000015093
22822008 - 23092406
270399
ENSAPLT00000045514
22822008 - 23091379
269372