About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23094647_23097948_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
23094647 - 23097948
Intron Length:
3302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGGTAG
5'SS Class:
weak_major
3'SS Sequence:
CTTATGACAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
CGTTTATGACTT
Flanking Amino Acid:
MFLMCVHIHANAS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.1
52.9
40.8
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
54
0.09
1.2
54
39.4
Minor 5ss
43.4
-0.7
3.1
51
46.9
Minor BPS
44.8
-0.3
1.9
62.05
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032541
23094637 - 23133702
39066