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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2309815_2310507_F

Intron Information:

Intron Rank:
133427
Intron Class:
major
Intron Phase:
Intron Coordinates:
2309815 - 2310507
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
ACCGCCCGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
69.9
0.5
1
73
31.5
Major PPT
79.9
0.67
0.8
76.5
32.1
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
46
-0.2
1.9
59.52
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021771
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030965
2308689 - 2311594
2906