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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23101722_23110182_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23101722 - 23110182
Intron Length:
8461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTGTCTCCACA
Flanking Amino Acid:
KAAAKYVDVPKPGMDLADTY
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
71.9
39.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
37.9
-1.4
2.7
48.5
40.3
Minor BPS
50.3
0
2.1
70.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032541
23094637 - 23133702
39066