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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23110291_23129303_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23110291 - 23129303
Intron Length:
19013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCC
Flanking Amino Acid:
EEMYIEKLFDQWYSNSMKVI
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.3
0.88
0.6
87.7
22.4
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
71.4
0.65
1.5
81.41
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032541
23094637 - 23133702
39066