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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23129409_23133531_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23129409 - 23133531
Intron Length:
4123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CAAGCCAGGATG
Flanking Amino Acid:
QLKTLIKIVKKTYRDFRLQG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
79.5
0.66
0.9
73.5
37
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
40.1
-0.9
1.7
37.48
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032541
23094637 - 23133702
39066