About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23141606_23141752_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
23141606 - 23141752

Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
AAG|GCAAGTAGC

5'SS Class:
strong_major

3'SS Sequence:
TTTGACTTTCAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTGAC

U12 Branch Point Sequence:
TCTGCTTTGACT

Flanking Amino Acid:
KVFTCEVCGKVFNAHYNLTR

Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
99.2
1.16
0.7
90.3
25.3

Major BPS
74.1
0.6
1
66.7
39.9

Major PPT
71.2
0.48
1.1
68.3
42.2

Minor 5ss
25.8
-2.8
3.6
36.7
40.4

Minor BPS
71.4
0.76
1.4
82.48
39.6

Associated Gene:

Gene:
FEZF1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

23140808 - 23143705
2898