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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23142324_23142893_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23142324 - 23142893
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
TCTCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTGT
U12 Branch Point Sequence:
CCCTTCTTGTCT
Flanking Amino Acid:
EFCGKGFHQKGNYKNHKLTH
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
72.4
0.5
0.8
65.6
30.3
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
43.1
-0.4
3.4
65.56
45.8

Associated Gene:

Gene:
FEZF1
Ensembl Gene ID:
ENSAPLG00000015055
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015683
23140808 - 23143705
2898