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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23166875_23170233_R

Intron Information:

Intron Rank:
138578
Intron Class:
major
Intron Phase:
Intron Coordinates:
23166875 - 23170233
Intron Length:
3359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
52.5
0.16
1.9
73.22
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035448
23166865 - 23171343
4479