Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23174568_23175664_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

23174568 - 23175664

Intron Length:

1097

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGAGTG

5'SS Class:

major

3'SS Sequence:

TTGCTGCCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

GTTATTTTACTC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

1.1

61.1

43.9

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

69.2

0.43

67.3

39.1

Minor 5ss

33.1

-1.9

3.7

47.1

48.3

Minor BPS

52.4

0.05

1.6

62.79

37.3

Associated Gene:

Gene:

AASS

Ensembl Gene ID:

ENSAPLG00000015230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047361

23174422 - 23202377

27956

ENSAPLT00000026914

23174422 - 23201795

27374

ENSAPLT00000024887

23174422 - 23207098

32677

ENSAPLT00000015911

23174422 - 23208249

33828