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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23178616_23178728_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23178616 - 23178728
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTGCCTTTGATT
Flanking Amino Acid:
LALGHHTPFMHIGMAHNYRN
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
76.9
31.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.4
0.68
0.9
77.1
35.8
Minor 5ss
34.2
-1.8
3.5
44.1
44.7
Minor BPS
63.1
0.49
1.2
72.86
38.5

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024887
23174422 - 23207098
32677
ENSAPLT00000015911
23174422 - 23208249
33828
ENSAPLT00000047361
23174422 - 23202377
27956
ENSAPLT00000026914
23174422 - 23201795
27374