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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23179937_23180025_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23179937 - 23180025
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATAT
Flanking Amino Acid:
HELKEVSQSGDLRKVYGTVL
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.6
0.67
0.8
77.9
35.6
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
51.3
0.12
1.9
75.21
41

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026914
23174422 - 23201795
27374
ENSAPLT00000024887
23174422 - 23207098
32677
ENSAPLT00000015911
23174422 - 23208249
33828
ENSAPLT00000047361
23174422 - 23202377
27956