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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23180154_23180325_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23180154 - 23180325
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTAGAT
U12 Branch Point Sequence:
GCATCTGTACTT
Flanking Amino Acid:
ELYTSRFNTDIAPYTTCLIN
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
74.3
36.2
Major BPS
49.5
-0
1.3
48.6
45.1
Major PPT
92.5
0.96
0.6
88.1
21.6
Minor 5ss
40.9
-1
3
56.6
41.1
Minor BPS
45.1
-0.3
2.2
60.56
43.9

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026914
23174422 - 23201795
27374
ENSAPLT00000024887
23174422 - 23207098
32677
ENSAPLT00000015911
23174422 - 23208249
33828
ENSAPLT00000047361
23174422 - 23202377
27956