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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23180475_23181640_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23180475 - 23181640
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TTGTTTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
APEGCPELPHKLLAICDISA
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
66.8
38.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79
0.65
0.9
77.9
36.6
Minor 5ss
32.8
-2
3.3
42.1
39
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047361
23174422 - 23202377
27956
ENSAPLT00000026914
23174422 - 23201795
27374
ENSAPLT00000024887
23174422 - 23207098
32677
ENSAPLT00000015911
23174422 - 23208249
33828