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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23186523_23190167_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23186523 - 23190167
Intron Length:
3645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
TRDSNVDITIASVMEEQLEQ
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.3
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1
68.1
40.9
Minor 5ss
41.3
-1
2.5
47.3
42.8
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047361
23174422 - 23202377
27956
ENSAPLT00000026914
23174422 - 23201795
27374
ENSAPLT00000024887
23174422 - 23207098
32677
ENSAPLT00000015911
23174422 - 23208249
33828