About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23191379_23192673_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23191379 - 23192673
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCTGCTATT
Flanking Amino Acid:
LTPAMKELQKSVEAAGITVI
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
75.9
0.58
0.9
73.7
35.9
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
46.5
-0.2
2.4
75.66
41.6

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026914
23174422 - 23201795
27374
ENSAPLT00000024887
23174422 - 23207098
32677
ENSAPLT00000015911
23174422 - 23208249
33828
ENSAPLT00000047361
23174422 - 23202377
27956