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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23199641_23199963_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23199641 - 23199963
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
GCTTTTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AGTTAATGAATA
Flanking Amino Acid:
AKHMEMNLPFGTGERDMIVM
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.7
38.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.4
0.64
0.8
77.1
31.6
Minor 5ss
38.3
-1.3
3.1
45
44.5
Minor BPS
48.3
-0.1
1.8
62.36
37

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024887
23174422 - 23207098
32677
ENSAPLT00000015911
23174422 - 23208249
33828
ENSAPLT00000047361
23174422 - 23202377
27956
ENSAPLT00000026914
23174422 - 23201795
27374