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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23201758_23208169_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23201758 - 23208169
Intron Length:
6412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTGT
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
CCAAACTGAAAC
Flanking Amino Acid:
GPILERVRAEEVTHFIACWS
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
41.4
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
44.6
-0.6
3.1
65.1
46.2
Minor BPS
44.2
-0.4
1.7
47.51
41

Associated Gene:

Gene:
AASS
Ensembl Gene ID:
ENSAPLG00000015230
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015911
23174422 - 23208249
33828