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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23211173_23211836_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23211173 - 23211836
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TCACTTTACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
NRDGPMIVHDEHGGVTAGTF
Intron Amino Acid Position:
1380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
75.5
40.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
61.4
0.26
1.1
63
36.3
Minor 5ss
46.6
-0.3
2.9
63.3
42
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000026434
23209445 - 23248589
39145
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000045597
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052