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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23216078_23217100_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23216078 - 23217100
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTGGTTTTATTT
Flanking Amino Acid:
TQRNYLVQTEEQYIFIHDAL
Intron Amino Acid Position:
1136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.1
0.74
0.8
77.2
36.9
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
53.1
0.18
1.7
70.24
42.1

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000045597
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000026434
23209445 - 23248589
39145