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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23217237_23218765_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23217237 - 23218765
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTGTTTTATA
Flanking Amino Acid:
PSGADSEEANSAGVGRTGTY
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.4
39.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
36.4
-1.5
3.3
47.6
48
Minor BPS
56.4
0.19
2
74.49
37.5

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000026434
23209445 - 23248589
39145
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000045597
23209445 - 23346496
137052