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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23217237_23219583_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23217237 - 23219583
Intron Length:
2347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTGTTTTATA
Flanking Amino Acid:
HAVGPVVVHCSAGVGRTGTY
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
76.6
35
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
51.6
0.06
2.7
72.7
44.5
Minor BPS
56.4
0.19
2
74.49
37.5

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037641
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052