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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23219748_23221117_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23219748 - 23221117
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
CTATATGGAATT
Flanking Amino Acid:
FTLRNTKIKKGSQKGRSSGR
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.2
34.3
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
36.8
-1.5
3.1
49.5
46.8
Minor BPS
43.5
-0.4
2.1
62.17
42.3

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000045597
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000026434
23209445 - 23248589
39145