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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23223506_23225213_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23223506 - 23225213
Intron Length:
1708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTCTTACTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTTGTCTTACTA
Flanking Amino Acid:
NKNRYINIVAYDHTRVKLAQ
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
80
0.68
0.9
73.7
35.7
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
55.3
0.16
1.7
65.77
41.9

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000026434
23209445 - 23248589
39145
ENSAPLT00000025932
23209445 - 23346496
137052