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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23227967_23231269_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
23227967 - 23231269
Intron Length:
3303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCACCCCTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCATAAAT
Flanking Amino Acid:
APPAPVFPVSDDVGAIPIKH
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
57.9
0.18
1
60.2
29.6
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
63.2
0.49
1.7
81.82
39.4

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025932
23209445 - 23346496
137052
ENSAPLT00000024915
23209445 - 23346496
137052
ENSAPLT00000037641
23209445 - 23346496
137052
ENSAPLT00000016617
23209445 - 23346496
137052
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000026434
23209445 - 23248589
39145