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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23238498_23244805_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23238498 - 23244805
Intron Length:
6308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATAC
5'SS Class:
major
3'SS Sequence:
TCTCTGACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCTCTGACT
Flanking Amino Acid:
LSQTTQPVYNEASNSSHESR
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
69.9
30
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
76.6
0.6
0.9
70.1
35.1
Minor 5ss
32.9
-1.9
3
38.5
41.1
Minor BPS
72.7
0.8
1.6
92.05
30.2

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029434
23209445 - 23346496
137052
ENSAPLT00000026434
23209445 - 23248589
39145
ENSAPLT00000016617
23209445 - 23346496
137052