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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_23245525_23245670_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
23245525 - 23245670
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTACA
5'SS Class:
major
3'SS Sequence:
CTCCACCTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGTTTATTATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
76.7
33.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
63.1
0.29
0.9
61.8
34.5
Minor 5ss
36.1
-1.6
2.6
43.5
43.6
Minor BPS
53
0.07
1.8
66.57
38.6

Associated Gene:

Gene:
PTPRZ1
Ensembl Gene ID:
ENSAPLG00000015904
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026434
23209445 - 23248589
39145